#!/bin/bash
#
NICEL="19"
IONICEc="2"
IONICEn="7"

function ana {
	echo "------------Starting for ${i}---------------"
	echo "Linking in ${i}/membrane_npgt.dcd --> membrane_npgt1.dcd"
	ln -s ${i}/membrane_npgt.dcd membrane_npgt1.dcd
	echo "Analizing order parameters in niced environment:"
	echo "NICE=${NICEL} IONICE_CLASS=${IONICEc} IONICE_CLASS-DATA=${IONICEn}"
	nice -n${NICEL} ionice -c${IONICEc} -n${IONICEn} python order_parameters.py
	echo "Removing membrane_npgt1.dcd link"
	rm membrane_npgt1.dcd
	echo "Moving ./scd_proper to ./${i}/"
	mv ./scd_proper ./${i}/
	echo "------------Done with ${i}---------------"
	echo ""
}

for i in run[0-9]* ; do
	if [[ -e "${i}/scd_proper/S.dat" ]] ; then
		echo "Skipping ${i}"
	else
		ana
	fi
done