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anamo.py Version:2.1

This script is intended to pars NAMD output files and plot energy, temperature, and whatever information NAMD writes down.
So far you can choose the following keyworkds for a classical MD:
TS Time PTS PTime BOND ANGLE DIHED IMPRP ELECT VDW BOUNDARY MISC KINETIC TOTAL TEMP TOTAL2 TOTAL3 TEMPAVG
PRESSURE GPRESSURE VOLUME PRES SAVG GPRESSAVG PTS PXX PXY PXZ PYX PYY PYZ PZX PZY PZZ GPXX GPXY GPXZ
GPYX GPYY GPYZ GPZX GPZY GPZZ PXXAV PXYAV PXZAV PYXAV PYYAV PYZAV PZXAV PZYAV PZZAV GPXXAV GPXYAV
GPXZAV GPYXAV GPYYAV GPYZAV GPZXAV GPZYAV GPZZAV

For accelerated MD the following keywords are supported:

aTS aTime adV adVAVG aBOND aANGLE aDIHED aIMPRP aELECT aVDW aPOTENTIAL

For every selection min/max (with the corresponding frame number) , mean, standard deviation and sum is calculated.